چندشکلی و بیان دو پروتئین LysM-RLK در سیب زمینی قبل و بعد از بروز بیماری بلایت زودرس

Aalen RB, 2017. Plant Receptor Kinases:Methods and Protocols, Ed, Vol(1621), Springer Nature publishing.

Arrighi J-F, Barre A, Amor BB, Bersoult A, Soriano LC, Mirabella R, de Carvalho-Niebel F, Journet E-P, Ghérardi M, Huguet T, 2006. The Medicago truncatula lysine motif-receptor-like kinase gene family includes NFP and new nodule-expressed genes. Plant physiology 142(1): 265-279.

Bagherabadi S, Zafari D, Soleimani MJ, 2015. A report on the Alternaria species and its similar genera in Hamedan province. Taxonomy and Biosystematics 7(24):95-112.

Beliveau C, Potvin C, Trudel J, Asselin A, Bellemare G, 1991. Cloning, sequencing, and expression in Escherichia coli of a Streptococcus faecalis autolysin. Journal of Bacteriology 173(18): 5619-5623.

Bolton MD, van Esse HP, Vossen JH, de Jonge R, Stergiopoulos I, Stulemeijer IJ, van den Berg GC, Borras-Hidalgo O, Dekker HL, de Koster CG, de Wit PJ, Joosten MH, Thomma BP, 2008. The novel Cladosporium fulvum lysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species. Mol Microbiol 69(1): 119-136.

Buist G, Steen A, Kok J, Kuipers OP, 2008. LysM, a widely distributed protein motif for binding to (peptido) glycans. Molecular Microbiology 68(4): 838-847.

Carotenuto G, Chabaud M, Miyata K, Capozzi M, Takeda N, Kaku H, Shibuya N, Nakagawa T, Barker DG, Genre A, 2017. The rice LysM receptor‐like kinase OsCERK1 is required for the perception of short‐chain chitin oligomers in arbuscular mycorrhizal signaling. New Phytologist 214(4): 1440-1446.

Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD, 2003. Multiple sequence alignment with the Clustal series of programs. Nucleic acids research 31(13):3497-500.

Conrath U, Linke C, Jeblick W, Geigenberger P, Quick WP, Neuhaus HE, 2003. Enhanced resistance to Phytophthora infestans and Alternaria solani in leaves and tubers, respectively, of potato plants with decreased activity of the plastidic ATP/ADP transporter. Planta 217(1): 75-83.

Corpet F, 1988. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Research 16(22): 10881-10890.

Couto D, Zipfel C, 2016. Regulation of pattern recognition receptor signalling in plants. Nature Reviews Immunology 16(9): 537.

De Jonge R, Thomma BP, 2009. Fungal LysM effectors: extinguishers of host immunity? Trends in microbiology 17(4): 151-157.

Erwig J, Ghareeb H, Kopischke M, Hacke R, Matei A, Petutschnig E, Lipka V, 2017. Chitin‐induced and Chitin Elicitor Receptor Kinase1 (CERK1) phosphorylation‐dependent endocytosis of Arabidopsis thaliana Lysin Motif‐Containing Receptor‐Like Kinase5 (LYK5). New Phytologist 215(1): 382-396.

Espinoza C, Liang Y, Stacey G, 2017. Chitin receptor CERK1 links salt stress and chitin‐triggered innate immunity in Arabidopsis. The Plant Journal 89(5): 984-995.

Garvey KJ, Saedi MS, Ito J, 1986. Nucleotide sequence of Bacillus phage Ø29 genes 14 and 15: homology of gene 15 with other phage lysozymes. Nucleic Acids Research 14(24): 10001-10008.

Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, Ed, Vol 41. [London]: Information Retrieval Ltd., c1979-c2000.

Jones JD, Dangl JL, 2006. The plant immune system. Nature 444(7117): 323.

Letunic I, Doerks T, Bork P, 2014. SMART: recent updates, new developments and status in 2015. Nucleic Acids Research 43(D1): D257-D260.

Lin W, Lu D, Gao X, Jiang S, Ma X, Wang Z, Mengiste T, He P, Shan L, 2013. Inverse modulation of plant immune and brassinosteroid signaling pathways by the receptor-like cytoplasmic kinase BIK1. Proceedings of the National Academy of Sciences 110(29): 12114-12119.

Liu Z, Wu Y, Yang F, Zhang Y, Chen S, Xie Q, Tian X, Zhou J-M, 2013. BIK1 interacts with PEPRs to mediate ethylene-induced immunity. Proceedings of the National Academy of Sciences 110(15): 6205-6210.

Livak KJ, Schmittgen TD, 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2− ΔΔCT method. methods 25(4): 402-408.

Macho AP, Zipfel C, 2014. Plant PRRs and the activation of innate immune signaling. Molecular Cell 54(2): 263-272.

Madsen EB, Madsen LH, Radutoiu S, Olbryt M, Rakwalska M, Szczyglowski K, Sato S, Kaneko T, Tabata S, Sandal N, 2003. A receptor kinase gene of the LysM type is involved in legumeperception of rhizobial signals. Nature 425(6958): 637.

Marchler-Bauer A, Bo Y, Han L, He J, Lanczycki CJ, Lu S, Chitsaz F, Derbyshire MK, Geer RC, Gonzales NR, 2016. CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. Nucleic Acids Research 45(D1): D200-D203.

Mélida H, Sopeña‐Torres S, Bacete L, Garrido‐Arandia M, Jordá L, López G, Muñoz‐Barrios A, Pacios LF, Molina A, 2018. Non‐branched β‐1, 3‐glucan oligosaccharides trigger immune responses in Arabidopsis. The Plant Journal 93(1): 34-49.

Miya A, Albert P, Shinya T, Desaki Y, Ichimura K, Shirasu K, Narusaka Y, Kawakami N, Kaku H, Shibuya N, 2007. CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis. Proc Natl Acad Sci U S A 104(49): 19613-19618.

Narusaka Y, Shinya T, Narusaka M, Motoyama N, Shimada H, Murakami K, Shibuya N, 2013. Presence of LYM2 dependent but CERK1 independent disease resistance in Arabidopsis. Plant Signal Behav 8(9): e25345.

Nicot N, Hausman J-F, Hoffmann L, Evers D, 2005. Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. Journal of experimental botany 56(421): 2907-2914.

Pasche J, Piche L, Gudmestad N, 2005. Effect of the F129L mutation in Alternaria solani on fungicides affecting mitochondrial respiration. Plant Disease 89(3): 269-278.

Petutschnig EK, Jones AM, Serazetdinova L, Lipka U, Lipka V, 2010. The lysin motif receptor-like kinase (LysM-RLK) CERK1 is a major chitin-binding protein in Arabidopsis thaliana and subject to chitin-induced phosphorylation. Journal of Biological Chemistry 285(37): 28902-28911.

Petutschnig EK, Stolze M, Lipka U, Kopischke M, Horlacher J, Valerius O, Rozhon W, Gust AA, Kemmerling B, Poppenberger B, Braus GH, Nurnberger T, Lipka V, 2014. A novel Arabidopsis CHITIN ELICITOR RECEPTOR KINASE 1 (CERK1) mutant with enhanced pathogen-induced cell death and altered receptor processing. New Phytol 204(4): 955-967.

Radutoiu S, Madsen LH, Madsen EB, Felle HH, Umehara Y, Grønlund M, Sato S, Nakamura Y, Tabata S, Sandal N, 2003. Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases. Nature 425(6958): 585.

Ray PD, Huang B-W, Tsuji Y, 2012. Reactive oxygen species (ROS) homeostasis and redox regulation in cellular signaling. Cellular Signalling 24(5): 981-990.

Schultz J, Copley RR, Doerks T, Ponting CP, Bork P, 2000. SMART: a web-based tool for the study of genetically mobile domains. Nucleic Acids Research 28(1): 231-234.

Shimizu T, Nakano T, Takamizawa D, Desaki Y, Ishii-Minami N, Nishizawa Y, Minami E, Okada K, Yamane H, Kaku H, Shibuya N, 2010. Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice. Plant J 64(2): 204-214.

Shinya T, Yamaguchi K, Desaki Y, Yamada K, Narisawa T, Kobayashi Y, Maeda K, Suzuki M, Tanimoto T, Takeda J, 2014. Selective regulation of the chitin‐induced defense response by the Arabidopsis receptor‐like cytoplasmic kinase PBL27. The Plant Journal 79(1): 56-66.

Shiu S-H, Bleecker AB, 2001a. Plant receptor-like kinase gene family: diversity, function, and signaling. Sci stke 113(113): re22.

Shiu S-H, Bleecker AB, 2001b. Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proceedings of the National Academy of Sciences 98(19): 10763-10768.

Shiu S-H, Bleecker AB, 2003. Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis. Plant physiology 132(2): 530-543.

Sigrist CJ, De Castro E, Cerutti L, Cuche BA, Hulo N, Bridge A, Bougueleret L, Xenarios I, 2012. New and continuing developments at PROSITE. Nucleic Acids Research 41(D1): D344-D347.

Tanaka K, Nguyen CT, Liang Y, Cao Y, Stacey G, 2013. Role of LysM receptors in chitin-triggered plant innate immunity. Plant Signal Behav 8(1): e22598.

Torii KU, 2009. Transmembrane receptors in plants: receptor kinases and their ligands. Annu Plant Rev 33:1-29.

Tsedaley B, 2014. Review on early blight (Alternaria spp.) of potato disease and its management options. J Biol Agric Healthc 4: 191-198.

Van der Waals JE, Korsten L, Slippers B, 2004. Genetic diversity among Alternaria solani isolates from potatoes in South Africa. Plant Disease,88(9):959-64.

Wang C, Wang G, Zhang C, Zhu P, Dai H, Yu N, He Z, Xu L, Wang E, 2017. OsCERK1-Mediated Chitin Perception and Immune Signaling Requires Receptor-like Cytoplasmic Kinase 185 to Activate an MAPK Cascade in Rice. Mol Plant 10(4): 619-633.

Zhou X, Wang J, Peng C, Zhu X, Yin J, Li W, He M, Wang J, Chern M, Yuan C, 2016. Four receptor‐like cytoplasmic kinases regulate development and immunity in rice. Plant, cell & environment 39(6): 1381-1392.

Zipfel C, 2008. Pattern-recognition receptors in plant innate immunity. Current Opinion in Immunology. 20(1):10-16.