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پیدا کردن موتیف در نواحی بالادست ژن های هم بیان بر اساس الگوریتم بهینه سازی فاخته و سرمایش تدریجی | ||
مجله مهندسی برق دانشگاه تبریز | ||
مقاله 28، دوره 46، شماره 3 - شماره پیاپی 77، آذر 1395، صفحه 333-344 اصل مقاله (4.52 M) | ||
نویسندگان | ||
مهری ملالو؛ فاطمه زارع میرک آباد* | ||
دانشگاه صنعتی امیرکبیر | ||
چکیده | ||
چکیده: در این مقاله برای حل مسئله کشف موتیف یک روش ترکیبی جدید بر اساس الگوریتم بهینهسازی فاخته، روش سرمایش تدریجی و بیشینهسازی زمان انتظار بهنام SA-COAMF ارائه میشود. این روش ترکیبی در همگرایی بهینه سراسری بسیار کارآمد است. یکی دیگر از ویـژگـیهـای شـاخـص ایـن الـگوریتـم، بهـره بـردن از هـر دو مـدل نمـایـش مـوتیـف (تـوالـی اجمـاع و مـاتـریـس احتمـالاتی) اسـت. عملکرد الگوریتم پیشنهادی بر روی یـک مجموعه از دادههـای زیستی (پـایگـاه داده SCPD) تسـت شـده و بـا تعـدادی از الگوریتمهـای معـروف کشف مـوتیـف (GA-DPAF، PSO+ و MEME) مقایسه میگردد. نتایج بهدستآمده نشاندهنده توانایی بالای الگوریتم پیشنهادی است. | ||
کلیدواژهها | ||
واژه های کلیدی: الگوریتم بهینه سازی فاخته؛ سرمایش تدریجی؛ ژن های هم بیان؛ کشف موتیف؛ ماکزیمم سازی زمان انتظار | ||
مراجع | ||
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